We can’t stress enough how important it is to quarantine your new Koi purchase!
The mistake many new and inexperienced koi keepers keepers make is to place their new purchase directly into their main pond only to find a few days later problems starting to arise, most commonly, with their existing koi often leading to loss of your beloved koi.
Why is it important to quarantine new koi?
First, the quarantine process gives the newly purchased koi time to rest and recover from the stress of handling, moving and transport. The journey to its new home may have stressed the fish immensely, which can weaken its immune system. Remember that a koi with a weakened immune system is highly prone to disease and parasite attack. Quarantining new koi fish gives them time to bounce back and get back into tip-top health. And, healthy koi have a much easier time fending off parasites and bacterial infections without human intervention.
Secondly, the koi quarantine period allows the new fish to become accustomed to the water parameters of its new home and to the pathogens living there. Your new pet, being a koi fish, has already been exposed to pathogenic bacteria, because pathogenic bacteria are in every body of water that contains fish. The question isn’t IF the koi has been exposed to pathogenic bacteria, more importantly how high or how low the level of the pathogenic bacteria has been.
Lastly, another reason for quarantining new koi is its current susceptibility to disease and parasite attack, you don’t want to expose your entire collection to the issue should there be an outbreak of some sort. The segregation of all new arrivals will provide ample time for any pathogens and parasites to cycle and become apparent. In the unfortunate event that this new fish becomes ill with disease or parasites it will be much easier to deal with the situation in the contained space of a quarantine tank rather than in your entire koi pond.
The idea of a koi quarantine tank system is to provide a safe and secure place with optimum water quality to allow the new koi time to relax and recover from the ordeal of transportation to its new home; all the while providing an opportunity for the owner to keep a close eye on the fish and monitor its health before introducing the newcomer to the other pond inhabitants.
Quarantining new koi fish is a big commitment, and certainly not a simple task. If not conducted properly then you may be compounding stressors on the new fish and actually do more harm than good. You have spent hard-earned money on your koi pond and live fish, quarantine could be considered insurance for your investment. With any new fish purchase a quarantine period is highly recommended. However, if you do not have the time or patience to set up an adequate quarantine system, or don’t follow good quarantine procedures, then you might be better off releasing the new fish directly into your pond and hoping for the best!
6 Components Required For a Good Koi Quarantine Tank System
Quarantining new koi can be simple if you have the right equipment for the job. Here’s a list of the 6 most important components of a good quarantine tank system.
The Quarantine Tank – Use a tank of sufficient size to hold the fish comfortably. A 500 litre tank can quarantine 4 koi of 10” size.
Tank Heater – Maintain a water temperature in the 22°-25° C range throughout the quarantine period.
Bio Filtration with Pump – Every quarantine system will need a bio filter and circulating water pump. The pump should be large enough to circulate the entire volume of the tank every 30-45 minutes. The bio filter can be a little tedious to get going; an adequate bio filter can take up to 4 weeks to become aged. To jump-start the process you can place some extra filter media in your koi pond’s filter for several weeks. Then move this into the quarantine system filter approximately two days prior to introducing new koi to the quarantine tank. Be sure to use a de-chlorinator as any chlorine in the water will kill off the bacteria and undermine your efforts.
Aeration Device – All fish need oxygen and so does the bio filter. Keep your aeration pump running with at least one air stone on the bottom of the tank at all times. Any span without aeration is asking for trouble.
A Lid or Cover – Koi will jump in attempts to flee unfamiliar surroundings. You should have a weighted net large enough to cover the entire tank. Many koi have been lost by jumping through the smallest area left uncovered and unattended. Another option is to build a sturdy wooden frame and staple plastic mesh onto the frame. You should not use clear plastic or glass as a cover for quarantine tanks because they will increase the temperature of the water. Your cover should allow for fresh air yet protect your koi from predators.
Microscope – A Microscope is simply a must have item for any koi keeper. Prices start from around €80 so there is no excuse for any koi keeper not to have one. It is a fact for a larger percentage of koi hobbyists, they will begin the process of second guessing the problem without any real means of diagnosis, then apply shot gun medications, in an attempt to cure the problem and in many cases only make matters worse. This can be largely driven by fear of the unknown or maybe a perception by an individual that he/she, is not capable of microscopic diagnosis. We will have a special article on Microscopes, how to use them and how to diagnose the various parasites, so stay tuned!
How do I seed a biological filter on the koi quarantine tank?
Koi pond filters and koi quarantine tank filters can take several weeks before they become colonized with good bacteria: aerobic bacterium Nitrobacter and Nitrosomonas. These bacteria are required to consume ammonia that is produced by the fish, reduce it to nitrite, and then to harmless nitrate. One way to jump-start your quarantine tank filter is to use some filter media from your active koi pond’s filter system. By transferring some of the filter media from your existing koi pond you will be planting seeded media into the temporary quarantine filter. This media should already be laden with live bacteria that will be needed to control ammonia in the quarantine tank water. But, it is never a good idea to return the bio media that was used in a quarantine tank back into the pond filtration system.
How long do I quarantine new koi fish?
How long to quarantine new koi is up to the owner, although 4-6 weeks is common.
What about water changes during quarantine?
Water changes are very important during the quarantine period. You need to exchange 10-15% of the total water volume twice weekly when a good bio-filter is actively working. If you do not have a bio-filter established then your quarantine tank will require a 50% water change daily. You should test the water for ammonia and nitrite daily. Both should be maintained in the range of zero-.01 ppm. And always keep plenty of chlorine remover products on hand and use accordingly with every water change.
Where should I set up the koi quarantine tank?
Spend some time to determine the ideal location for your quarantine tank. Put the quarantine tank where you will have easy access to it and preferably where it will not get too hot, or too cold. It should have access to electricity, your water source, and shade for part of every day. If it will be in your garage then use the sniff test. Close your eyes and sniff, if you can smell gasoline or paint fumes so will your fish! The aeration pump will transfer them into the water. Either store gas powered equipment, gas, oil and paint products elsewhere, or find a better location for the quarantine tank. Motor vehicle exhaust should also be considered.
How about feeding koi in a quarantine tank?
Feeding koi in the quarantine system gets very tricky. Generally, koi can go without food for two weeks, but it seems cruel to make them fast for an extended time. Over feeding in the quarantine system can bring on big troubles because bio filtration is slow to get going or very likely inadequate in most cases. High ammonia is a serious threat to your fish while under quarantine. Do not feed fish in the quarantine tank for the first two days. Then, begin by offering very small portions of food once per day. Be sure to monitor ammonia level with a test kit and stop feeding and perform a water change if the ammonia begins to creep up.
What chemicals do I use on koi during quarantine?
It is best not to use any type of chemical treatment in quarantine unless you know what and why the chemical is being administered. Salt is probably the safest and most effective additive for use in the koi quarantine tank. Salt will kill or slow down most parasites and ease the stress level for your koi. Salt concentration should be maintained at .3 ppt, or 3kg for 1000 litres of water. For therapeutic application it is recommended to use only non-iodized salt. Remember to add salt with every water change.
Do’s and Dont’s for Successful Koi Quarantine
Just because you have a new koi in your quarantine tank does not mean that you should start dumping chemicals on it one after another in an overzealous attempt to ‘make it healthy’. Do you have any reason to believe that the new fish is unhealthy? Have you observed its activity enough to know if the fish has symptoms indicating illness or parasite infestation? Have you preformed skin scrapes and found any parasitic activity? Quarantine should be a time of recovery and adjustment, and the opportunity for any latent pathogens to emerge. Don’t rush the quarantine process.
Do’s and Dont’s for Koi Quarantine
- Do set up your quarantine tank at least 1 week prior to new koi arrival. Establishing a bio filter can take up to 3 weeks.
- Do maintain salt at 3 ppt. (3 kg/1000 Litres) Purchase a salinity meter.
- Do use chlorine remover. Buy extra and keep it on-hand at all times.
- Do run an aerator 24/7. Any time without a bubbler can induce stress or become fatal.
- Do monitor water quality. Test for ammonia, nitrite and pH daily. Purchase a test kit or new supplies.
- Do perform regular water changes of 10-15% every day.
- Do skin scrapes on the third day of quarantine, whenever parasite activity is suspected and 3 days before the quarantine period ends.
- Do maintain water temperature between 22°-25° C. Buy a waterproof thermometer and hang it in the tank for quick reference.
- Do cover the quarantine tank to protect your koi from predators, or jumping out of the quarantine tank.
- Don’t quarantine a single fish. Koi are very social and will sulk when isolated which can increase stress.
- Don’t use chemical treatments indiscriminately. Ask a knowledgeable koi professional if you are unsure of the remedy for a problem encountered.
- Don’t use the dip or concentrated bath method to administer any treatment to new koi.
- Don’t over feed fish in quarantine. Offer food on the 3rd day of quarantine and only a small portion once a day thereafter. Quarantine is a good time to give medicated koi food.
- Don’t allow unsupervised visitors access to your quarantine tank.
- Don’t allow feces or debris to build up in the quarantine tank. Use a siphon or wet-vac to remove any accumulating debris.
- Don’t ignore the fish while in quarantine. It may be better to put the new fish directly into your pond if you are not going to monitor its health, maintain water quality, etc.
Treating koi in quarantine:
Use salt as a first step to eliminating parasites. Begin with a 0.3% level (3 KG per 1000 Litres.) and increase by 0.1% for three days to reach 0.6% salt level if needed. Keep at this rate for three days then reduce with water changes until the level is down to the 0.3%.
Chemical treatments during quarantine
Perform skin scrapes and use a microscope to check for parasites. If any are discovered then use the following products, and always follow manufacturer’s directions.
- Use Fluke M or Fluke Solve for gill fluke, skin fluke and internal worms.
- For Costia, Chilodonella and White Spot parasites treat with Malachite Green & Formalin.*
- For Trichodina treat with Potassium Permanganate. *
- Chloramine-T is a good product for the control of bacterial gill disease, body fungus and bacterial infections.*Note that salt level must be below .1% when using these products.






